Author | Clasen, Milan A. | |
Author | Santos, Marlon D. M. | |
Author | Kurt, Louise Ulrich | |
Author | Fischer, Juliana de Saldanha da Gama | |
Author | Camillo-Andrade, Amanda C. | |
Author | Sales, Lucas Albuquerque | |
Author | Souza, Tatiana de Arruda Campos Brasil de | |
Author | Lima, Diogo Borges | |
Author | Gozzo, Fabio C. | |
Author | Valente, Richard Hemmi | |
Author | Duran, Rosario | |
Author | Barbosa, Valmir C. | |
Author | Carvalho, Paulo Costa | |
Access date | 2023-04-17T17:41:43Z | |
Available date | 2023-04-17T17:41:43Z | |
Document date | 2023 | |
Citation | CLASEN, Milan A. et al. PatternLab V handles multiplex spectra in shotgun proteomic searches and increases identification. Journal of the American Society for Mass Spectrometry, p. 1-3, 2023. | en_US |
ISSN | 1879-1123 | en_US |
URI | https://www.arca.fiocruz.br/handle/icict/57829 | |
Language | por | en_US |
Publisher | American Chemical Society | en_US |
Rights | open access | en_US |
Subject in Portuguese | PatternLab V | en_US |
Title | PatternLab V handles multiplex spectra in shotgun proteomic searches and increases identification | en_US |
Type | Article | en_US |
DOI | https://doi.org/10.1021/jasms.3c00063 | |
Abstract | Complex protein mixtures typically generate many tandem mass spectra produced by different peptides coisolated in the gas phase. Widely adopted proteomic data analysis environments usually fail to identify most of these spectra, succeeding at best in identifying only one of the multiple cofragmenting peptides. We present PatternLab V (PLV), an updated version of PatternLab that integrates the YADA 3 deconvolution algorithm to handle such cases efficiently. In general, we expect an increase of 10% in spectral identifications when dealing with complex proteomic samples. | en_US |
Affilliation | Fundação Oswaldo Cruz. Instituto Carlos Chagas. Laboratório de Proteômica Estrutural e Computacional. Curitiba, PR, Brasil. | en_US |
Affilliation | Fundação Oswaldo Cruz. Instituto Carlos Chagas. Laboratório de Proteômica Estrutural e Computacional. Curitiba, PR, Brasil. | en_US |
Affilliation | Fundação Oswaldo Cruz. Instituto Carlos Chagas. Laboratório de Proteômica Estrutural e Computacional. Curitiba, PR, Brasil. | en_US |
Affilliation | Fundação Oswaldo Cruz. Instituto Carlos Chagas. Laboratório de Proteômica Estrutural e Computacional. Curitiba, PR, Brasil. | en_US |
Affilliation | Fundação Oswaldo Cruz. Instituto Carlos Chagas. Laboratório de Proteômica Estrutural e Computacional. Curitiba, PR, Brasil. | en_US |
Affilliation | Fundação Oswaldo Cruz. Instituto Carlos Chagas. Laboratório de Proteômica Estrutural e Computacional. Curitiba, PR, Brasil. | en_US |
Affilliation | Fundação Oswaldo Cruz. Instituto Carlos Chagas. Laboratório de Proteômica Estrutural e Computacional. Curitiba, PR, Brasil. | en_US |
Affilliation | Department of Structural Biology. Leibniz Forschungsinstitut für Molekulare Pharmakologie. Berlin, Germany. | en_US |
Affilliation | Universidade Estadual de Campinas. Dalton Mass Spectrometry Laboratory. Campinas, SP, Brasil. | en_US |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Toxinologia. Rio de Janeiro, RJ, Brasil. | en_US |
Affilliation | Analytical Biochemistry and Proteomics Unit. Institut Pasteur de Montevideo. Montevideo, Uruguay. | en_US |
Affilliation | Universidade Federal do Rio de Janeiro. Programa de Engenharia de Sistemas e Computação. Rio de Janeiro, RJ, Brasil. | en_US |
Affilliation | Fundação Oswaldo Cruz. Instituto Carlos Chagas. Laboratório de Proteômica Estrutural e Computacional. Curitiba, PR, Brasil. | en_US |
Subject | Proteomics | en_US |
Subject | Proteins | en_US |
Subject | Peptides | en_US |
Subject in Spanish | Proteómica | en_US |
Subject in Spanish | Proteínas | en_US |
Subject in Spanish | Péptidos | en_US |
Subject in French | Protéomique | en_US |
Subject in French | Protéines | en_US |
Subject in French | Peptides | en_US |
DeCS | Proteômica | en_US |
DeCS | Proteínas | en_US |
DeCS | Peptídeos | en_US |